PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_33212_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 543aa    MW: 61115.4 Da    PI: 7.3596
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_33212_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.19.8e-0698121327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C f++  G C+ GdrC+F Hgp
  Neem_33212_f_2  98 RVPCFFYFN-GLCNKGDRCSFLHGP 121
                     678888888.*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.5962046IPR000571Zinc finger, CCCH-type
SMARTSM003560.612245IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-695120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.81295122IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-496121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-5100123IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MILFRFQGID CEYRHNDVAR LNPRDCWYWL SGNCINPTCS FRHPPLDGHA TKVPSEFASL  60
PDQSSCCLAQ PLDGHATKVP SEFASLPDQS SVVVNKTRVP CFFYFNGLCN KGDRCSFLHG  120
PNDSAPAGKP SKAAAATNDA LQSENKSSGG NGTGSAPTET HPNPAVITSN QAVDTIVRTK  180
VGILHSSPRS FPQRSASPPV SLSDCEEAAV INSDFMPPLE GLMKSKSHLS TDWSPEEQVD  240
DHIEPEGRRE LSPEFDVLLN NDNMSENLGY EDDPEYLLAI NREHRELNGH LLCYDFEDAI  300
EYEPMYPDDA CNCLDNNQHV LDDFSEHPSN SKGRILDSIL SRKRKLLPMK LAVANRNVDL  360
RDYLRKRRLV DGHLVIHSSR RRQSSRLIGR SQERPQGLVV NQRLHRILAS EFGENYIKSN  420
ENKGTFLKRA NRQGWPRHSK SNMLRQGYKE KRRACKEFDR LVISREPFSG ERTSSQISST  480
FTGPKTLAEI KEGKKKAEEN GDCFGEMRNS TRMSVDFQGP KPLNEILKEK RRLDTVREGD  540
SVS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006475812.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
RefseqXP_006475813.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
TrEMBLA0A067GL000.0A0A067GL00_CITSI; Uncharacterized protein
STRINGVIT_11s0016g04980.t011e-148(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16432710